Citrate cycle (TCA cycle)
Source | ID | Pathway |
---|---|---|
KEGG | 00020 | ![]() |
Pathway Metabolites
YMDB ID | Name CAS Number | IUPAC Name | Formula Weight | Structure |
---|---|---|---|---|
YMDB00026 | Isocitric acid 320-77-4 | 1-hydroxypropane-1,2,3-tricarboxylic acid | C6H8O7 192.1235 | ![]() |
YMDB00086 | Citric acid 77-92-9 | 2-hydroxypropane-1,2,3-tricarboxylic acid | C6H8O7 192.1235 | ![]() |
YMDB00101 | Fumaric acid 110-17-8 | (2E)-but-2-enedioic acid | C4H4O4 116.0722 | ![]() |
YMDB00153 | Oxoglutaric acid 328-50-7 | 2-oxopentanedioic acid | C5H6O5 146.0981 | ![]() |
YMDB00175 | Pyruvic acid 127-17-3 | 2-oxopropanoic acid | C3H4O3 88.0621 | ![]() |
YMDB00210 | Oxalosuccinic acid 1948-82-9 | 1-oxopropane-1,2,3-tricarboxylic acid | C6H6O7 190.1076 | ![]() |
YMDB00235 | Oxalacetic acid 328-42-7 | 2-oxobutanedioic acid | C4H4O5 132.0716 | ![]() |
YMDB00276 | Phosphoenolpyruvic acid 138-08-9 | 2-(phosphonooxy)prop-2-enoic acid | C3H5O6P 168.042 | ![]() |
YMDB00280 | (S)-Malic acid 97-67-6 | (2S)-2-hydroxybutanedioic acid | C4H6O5 134.0874 | ![]() |
YMDB00312 | Acetyl-CoA 72-89-9 | {[(2R,3S,4R,5R)-2-({[({[(3R)-3-[(2-{[2-(acetylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]-3-hydroxy-2,2-dimethylpropoxy](hydroxy)phosphoryl}oxy)(hydroxy)phosphoryl]oxy}methyl)-5-(6-amino-9H-purin-9-yl)-4-hydroxyoxolan-3-yl]oxy}phosphonic acid | C23H38N7O17P3S 809.571 | ![]() |
YMDB00338 | Succinic acid 110-15-6 | butanedioic acid | C4H6O4 118.088 | ![]() |
YMDB00381 | Thiamine pyrophosphate 154-87-0 | 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium | C12H19N4O7P2S 425.314 | ![]() |
YMDB00514 | Succinyl-CoA 604-98-8 | 4-[(2-{3-[(2R)-3-[({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-2-hydroxy-3-methylbutanamido]propanamido}ethyl)sulfanyl]-4-oxobutanoic acid | C25H40N7O19P3S 867.607 | ![]() |
YMDB00630 | cis-aconitic acid 585-84-2 | (1Z)-prop-1-ene-1,2,3-tricarboxylic acid | C6H6O6 174.1082 | ![]() |
YMDB01038 | fumarate(2-) 110-17-8 | C4H2O4 114.0563 | ![]() | |
YMDB01050 | phosphoenolpyruvate 138-08-9 | C3H4O6P 167.034 | ![]() | |
YMDB01053 | pyruvate 127-17-3 | C3H3O3 87.0541 | ![]() |
Pathway Proteins
Uniprot ID | Gene Name Locus | Name | Type | Metabolites |
---|---|---|---|---|
P09624 | LPD1 YFL018C | Dihydrolipoyl dehydrogenase, mitochondrial | Enzyme | |
P19414 | ACO1 YLR304C | Aconitate hydratase, mitochondrial | Enzyme | |
P39533 | ACO2 YJL200C | Probable aconitate hydratase 2 | Enzyme | |
P28834 | IDH1 YNL037C | Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial | Enzyme | |
P28241 | IDH2 YOR136W | Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial | Enzyme | |
P53982 | IDP3 YNL009W | Isocitrate dehydrogenase [NADP] | Enzyme | |
P21954 | IDP1 YDL066W | Isocitrate dehydrogenase [NADP], mitochondrial | Enzyme | |
P41939 | IDP2 YLR174W | Isocitrate dehydrogenase [NADP] cytoplasmic | Enzyme | |
P53598 | LSC1 YOR142W | Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial | Enzyme | |
P19262 | KGD2 YDR148C | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial | Enzyme | |
P43635 | CIT3 YPR001W | Citrate synthase 3 | Enzyme | |
P53312 | LSC2 YGR244C | Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial | Enzyme | |
P12695 | PDA2 YNL071W | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial | Enzyme | |
P08679 | CIT2 YCR005C | Citrate synthase, peroxisomal | Enzyme | |
P00890 | CIT1 YNR001C | Citrate synthase, mitochondrial | Enzyme | |
Q00711 | SDH1 YKL148C | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | Enzyme | |
P47052 | YJL045W | Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial | Enzyme | |
P21801 | SDH2 YLL041C | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | Enzyme | |
P08417 | FUM1 YPL262W | Fumarate hydratase, mitochondrial | Enzyme | |
P11154 | PYC1 YGL062W | Pyruvate carboxylase 1 | Enzyme | |
P10963 | PCK1 YKR097W | Phosphoenolpyruvate carboxykinase [ATP] | Enzyme | |
P32327 | PYC2 YBR218C | Pyruvate carboxylase 2 | Enzyme | |
P22133 | MDH2 YOL126C | Malate dehydrogenase, cytoplasmic | Enzyme | |
P32419 | MDH3 YDL078C | Malate dehydrogenase, peroxisomal | Enzyme | |
P20967 | KGD1 YIL125W | 2-oxoglutarate dehydrogenase, mitochondrial | Enzyme | |
P16387 | PDA1 YER178W | Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial | Enzyme | |
P32473 | PDB1 YBR221C | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | Enzyme | |
P17505 | MDH1 | Malate dehydrogenase, mitochondrial | Enzyme |