YMDB Downloads
YMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (YMDB) and the original publication (see below). We ask that users who download significant portions of the database cite the YMDB paper in any resulting publications.
- YMDB 2.0: A Significantly Expanded Version of the Yeast Metabolome Database. Ramirez-Guana M, Marcu A, Pon A, Guo AC, Sajed T, Wishart NA, Karu N, Djoumbou Y, Arndt D and Wishart DS. Nucleic Acids Res. 2017 Jan 4;45(D1):D440-D445. PubMed: 27899612
- YMDB: The Yeast Metabolome Database. Jewison T, Neveu V, Lee J, Knox C, Liu P, Mandal R, Murthy RK, Sinelnikov I, Guo AC, Wilson M, Djoumbou Y and Wishart DS. Nucleic Acids Res. 2012 Jan;40(Database ussue):D815-20. PubMed: 22064855
Full Database
| Description | Format | Download |
|---|---|---|
| All metabolite, enzyme and transporter information | JSON | Download |
Structures (in SDF Format)
| Data Set | SDF File |
|---|---|
| All Metabolites | Download |
Protein/Gene Sequences (in FASTA Format)
| Data Set | Protein Sequences | Gene Sequences |
|---|---|---|
| All | Download | Download |