Oxidative phosphorylation

Source	ID	Pathway
PathWhiz	PW002461
KEGG	00190

Pathway Metabolites

YMDB ID	Name CAS Number	IUPAC Name	Formula Weight	Structure
YMDB00041	Heme 14875-96-8		C34H32FeN4O4 616.487
YMDB00085	Flavin Mononucleotide 146-17-8	{[(2R,3S,4S)-5-{7,8-dimethyl-2,4-dioxo-2H,3H,4H,10H-benzo[g]pteridin-10-yl}-2,3,4-trihydroxypentyl]oxy}phosphonic acid	C17H21N4O9P 456.3438
YMDB00088	Ubiquinone Q1 727-81-1	2,3-dimethoxy-5-methyl-6-(3-methylbut-2-en-1-yl)cyclohexa-2,5-diene-1,4-dione	C14H18O4 250.2903
YMDB00101	Fumaric acid 110-17-8	(2E)-but-2-enedioic acid	C4H4O4 116.0722
YMDB00109	Adenosine triphosphate 56-65-5	({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acid	C10H16N5O13P3 507.181
YMDB00110	NAD 53-84-9	1-[(2R,3R,4S,5R)-5-[({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-3,4-dihydroxyoxolan-2-yl]-3-carbamoyl-1lambda5-pyridin-1-ylium	C21H28N7O14P2 664.433
YMDB00143	NADH 58-68-4	[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(2R,3S,4R,5R)-5-(3-carbamoyl-1,4-dihydropyridin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy})phosphinic acid	C21H29N7O14P2 665.441
YMDB00207	Copper(2+) 15158-11-9	copper(2+) ion	Cu 63.546
YMDB00219	Pyrophosphate 14000-31-8	(phosphonooxy)phosphonic acid	H4O7P2 177.9751
YMDB00296	FAD 146-14-5	{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}[({[(2R,3S,4S)-5-{7,8-dimethyl-2,4-dioxo-2H,3H,4H,10H-benzo[g]pteridin-10-yl}-2,3,4-trihydroxypentyl]oxy}(hydroxy)phosphoryl)oxy]phosphinic acid	C27H33N9O15P2 785.5497
YMDB00338	Succinic acid 110-15-6	butanedioic acid	C4H6O4 118.088
YMDB00412	NAD(+) 53-84-9		C21H28N7O14P2 664.433
YMDB00597	FADH2 1910-41-4	{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}[({[(2R,3S,4S)-5-{7,8-dimethyl-2,4-dioxo-1H,2H,3H,4H,5H,10H-benzo[g]pteridin-10-yl}-2,3,4-trihydroxypentyl]oxy}(hydroxy)phosphoryl)oxy]phosphinic acid	C27H35N9O15P2 787.5656
YMDB00844	PPPi 10380-08-2	{[hydroxy(phosphonooxy)phosphoryl]oxy}phosphonic acid	H5O10P3 257.955
YMDB00862	hydron 12408-02-5	hydron	H 1.00794
YMDB00890	water 7732-18-5	water	H2O 18.0153
YMDB00900	oxygen 7782-44-7	dioxygen	O2 31.9988
YMDB00902	ubiquinol 56275-39-9	2,3-dimethoxy-5-methyl-6-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl]benzene-1,4-diol	C49H78O4 731.1412
YMDB00907	phosphate 14265-44-2	phosphoric acid	O4P 94.9714
YMDB00914	ADP 58-64-0	[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid	C10H15N5O10P2 427.2011
YMDB00987	Protoheme IX 14875-96-8	3-[(12Z)-20-(2-carboxyethyl)-10,15-diethenyl-5,9,14,19-tetramethyl-21,23,24,25-tetraaza-22-ferrahexacyclo[9.9.3.1³,⁶.1¹³,¹⁶.0⁸,²³.0¹⁸,²¹]pentacosa-1,3(25),4,6,8,10,12,14,16(24),17,19-undecaen-4-yl]propanoic acid	C34H32FeN4O4 616.487
YMDB01028	dioxygen 7782-44-7		O2 31.9988
YMDB01038	fumarate(2-) 110-17-8		C4H2O4 114.0563
YMDB16132	Heme O	3-[(11Z,16Z)-20-(2-carboxyethyl)-15-ethenyl-10-[(4E,8E)-1-hydroxy-5,9,13-trimethyltetradeca-4,8,12-trien-1-yl]-5,9,14,19-tetramethyl-21,23,24,25-tetraaza-22-ferrahexacyclo[9.9.3.1³,⁶.1¹³,¹⁶.0⁸,²³.0¹⁸,²¹]pentacosa-1(20),2,4,6(25),7,9,11,13(24),14,16,18-undecaen-4-yl]propanoic acid	C49H58FeN4O5 838.854
YMDB16248	QH(2)	2,3-dimethoxy-5-methyl-6-(3-methylbut-2-en-1-yl)benzene-1,4-diol	C14H20O4 252.3062
YMDB16250	2Fe-2S	bis(lambda2-iron(2+) ion) disulfane tetrasulfanide	Fe2H8S6 312.11
YMDB16252	4Fe-4S	tetrakis(lambda1-iron(1+) ion) tetrasulfane tetrasulfanide	Fe4H12S8 491.96
YMDB16270	Heme D	3-[20-(2-carboxyethyl)-10,15-bis(carboxymethyl)-5,10,15,19-tetramethyl-9,14-dioxo-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1(20),2,4,6,8(23),11,13(22),16,18-nonaen-4-yl]propanoic acid	C34H34N4O10 658.6546
YMDB16282	ferroheme b	5,9-bis(2-carboxylatoethyl)-14,19-diethenyl-4,10,15,20-tetramethyl-21,22,23,24-tetraazapentacyclo[16.2.1.1³,⁶.1⁸,¹¹.1¹³,¹⁶]tetracosa-1,3(24),4,6,8(23),9,11,13,15,17,19-undecaene-21,22-diide iron	C34H30FeN4O4 614.485
YMDB16283	3Fe-4S iron-sulfur cluster	λ²-iron(2+) ion diiron tetrasulfanide	Fe3H4S4 299.81

Pathway Proteins