Nitrogen metabolism

Source	ID	Pathway
PathWhiz	PW002504
KEGG	00910

Pathway Metabolites

YMDB ID	Name CAS Number	IUPAC Name	Formula Weight
YMDB00002	L-Glutamine 56-85-9	(2S)-2-amino-4-carbamoylbutanoic acid	C₅H₁₀N₂O₃ 146.1445
YMDB00016	Glycine 56-40-6	2-aminoacetic acid	C₂H₅NO₂ 75.0666
YMDB00026	Isocitric acid 320-77-4	1-hydroxypropane-1,2,3-tricarboxylic acid	C₆H₈O₇ 192.1235
YMDB00082	Carbamoylphosphate 590-55-6	(carbamoyloxy)phosphonic acid	CH₄NO₅P 141.0199
YMDB00091	Ammonia 7664-41-7	ammonia	H₃N 17.0305
YMDB00109	Adenosine triphosphate 56-65-5	({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acid	C₁₀H₁₆N₅O₁₃P₃ 507.181
YMDB00110	NAD 53-84-9	1-[(2R,3R,4S,5R)-5-[({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-3,4-dihydroxyoxolan-2-yl]-3-carbamoyl-1lambda5-pyridin-1-ylium	C₂₁H₂₈N₇O₁₄P₂ 664.433
YMDB00135	Nitrite 14797-65-0	nitrous acid	NO₂ 46.0055
YMDB00143	NADH 58-68-4	[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(2R,3S,4R,5R)-5-(3-carbamoyl-1,4-dihydropyridin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy})phosphinic acid	C₂₁H₂₉N₇O₁₄P₂ 665.441
YMDB00153	Oxoglutaric acid 328-50-7	2-oxopentanedioic acid	C₅H₆O₅ 146.0981
YMDB00226	L-Asparagine 70-47-3	(2S)-2-amino-3-carbamoylpropanoic acid	C₄H₈N₂O₃ 132.1179
YMDB00271	L-Glutamic acid 56-86-0	(2S)-2-aminopentanedioic acid	C₅H₉NO₄ 147.1293
YMDB00382	Carbonic acid 463-79-6	carbonic acid	CH₂O₃ 62.0248
YMDB00385	Formic acid 64-18-6	formic acid	CH₂O₂ 46.0254
YMDB00426	NADPH 53-57-6	{[(2R,3R,4R,5R)-2-(6-amino-9H-purin-9-yl)-5-[({[({[(2R,3S,4R,5R)-5-(3-carbamoyl-1,4-dihydropyridin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-4-hydroxyoxolan-3-yl]oxy}phosphonic acid	C₂₁H₃₀N₇O₁₇P₃ 745.4209
YMDB00427	NADP 53-59-8	1-[(2R,3R,4S,5R)-5-[({[({[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-3,4-dihydroxyoxolan-2-yl]-3-carbamoyl-1lambda5-pyridin-1-ylium	C₂₁H₂₉N₇O₁₇P₃ 744.4129
YMDB00862	hydron 12408-02-5	hydron	H 1.00794
YMDB00890	water 7732-18-5	water	H₂O 18.0153
YMDB00896	L-Aspartic acid 56-84-8	(2S)-2-aminobutanedioic acid	C₄H₇NO₄ 133.1027
YMDB00907	phosphate 14265-44-2	phosphoric acid	O₄P 94.9714
YMDB00912	Carbon dioxide 124-38-9	methanedione	CO₂ 44.0095
YMDB00914	ADP 58-64-0	[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid	C₁₀H₁₅N₅O₁₀P₂ 427.2011
YMDB00981	Nitrate 14797-55-8	nitrate	NO₃ 62.0049
YMDB00982	no 10102-43-9	nitroso	NO 30.0061
YMDB01025	formate 64-18-6		CHO₂ 45.0174

Pathway Proteins

Uniprot ID	Gene Name Locus	Name	Type	Metabolites
P32288	GLN1 YPR035W	Glutamine synthetase	Enzyme	L-Glutamine Ammonia Adenosine triphosphate L-Glutamic acid Ammonium hydron phosphate ADP
P49089	ASN1 YPR145W	Asparagine synthetase [glutamine-hydrolyzing] 1	Enzyme	L-Glutamine Adenosine monophosphate Adenosine triphosphate Pyrophosphate L-Asparagine L-Glutamic acid Ammonium hydron water L-Aspartic acid
Q12680	GLT1 YDL171C	Glutamate synthase [NADH]	Enzyme	L-Glutamine NAD NADH Oxoglutaric acid L-Glutamic acid NAD(+) hydron
P49090	ASN2 YGR124W	Asparagine synthetase [glutamine-hydrolyzing] 2	Enzyme	L-Glutamine Adenosine monophosphate Adenosine triphosphate Pyrophosphate L-Asparagine L-Glutamic acid Ammonium hydron water L-Aspartic acid
P47177	YJR149W	Putative nitronate monooxygenase	Enzyme	Acetaldehyde Flavin Mononucleotide Nitrite Ethylnitronate FMNH2
P53982	IDP3 YNL009W	Isocitrate dehydrogenase [NADP]	Enzyme	Isocitric acid Oxoglutaric acid Oxalosuccinic acid NADPH NADP hydron Carbon dioxide
P21954	IDP1 YDL066W	Isocitrate dehydrogenase [NADP], mitochondrial	Enzyme	Isocitric acid Oxoglutaric acid Oxalosuccinic acid NADPH NADP hydron Carbon dioxide
P41939	IDP2 YLR174W	Isocitrate dehydrogenase [NADP] cytoplasmic	Enzyme	Isocitric acid Oxoglutaric acid Oxalosuccinic acid NADPH NADP hydron Carbon dioxide
P31373	CYS3 YAL012W	Cystathionine gamma-lyase	Enzyme	L-Cysteine 2-Ketobutyric acid Ammonia Pyruvic acid L-Cystathionine Ammonium Hydrogen sulfide hydron water Selenomethionine Se-Methylselenocysteine 2-aminoprop-2-enoate methylselenol
P33327	GDH2 YDL215C	NAD-specific glutamate dehydrogenase	Enzyme	Ammonia NAD NADH Oxoglutaric acid L-Glutamic acid NAD(+) Ammonium hydron water
P11163	ASP3-1 YLR155C	L-asparaginase 2	Enzyme	Ammonia L-Asparagine Ammonium water L-Aspartic acid
P39708	GDH3 YAL062W	NADP-specific glutamate dehydrogenase 2	Enzyme	Ammonia Oxoglutaric acid L-Glutamic acid Ammonium NADPH NADP hydron water
P48015	GCV1 YDR019C	Aminomethyltransferase, mitochondrial	Enzyme	Glycine Ammonia Tetrahydrofolic acid 5,10-Methenyltetrahydrofolic acid 5,10-Methylene-THF N5-Formyl-THF Ammonium water
P38986	ASP1 YDR321W	L-asparaginase 1	Enzyme	Ammonia L-Asparagine Ammonium water L-Aspartic acid
P07262	GDH1 YOR375C	NADP-specific glutamate dehydrogenase 1	Enzyme	Ammonia Oxoglutaric acid L-Glutamic acid Ammonium NADPH NADP hydron water
P53101	STR3 YGL184C	Cystathionine beta-lyase	Enzyme	Ammonia Pyruvic acid L-Cystathionine Homocysteine Ammonium L-Homocysteine water Selenohomocysteine Selenocystathionine
P43623	IRC7 YFR055W	Putative cystathionine beta-lyase	Enzyme	Ammonia Pyruvic acid L-Cystathionine Homocysteine Ammonium L-Homocysteine water Selenohomocysteine Selenocystathionine
P53615	NCE103 YNL036W	Carbonic anhydrase	Enzyme	Carbonic acid Carbon dioxide