Vitamin B6 metabolism
| Source | ID | Pathway |
|---|---|---|
| KEGG | 00750 |  |
Pathway Metabolites
| YMDB ID | Name CAS Number | IUPAC Name | Formula Weight | Structure |
|---|---|---|---|---|
| YMDB00037 | Pyridoxine 65-23-6 | 4,5-bis(hydroxymethyl)-2-methylpyridin-3-ol | C8H11NO3 169.1778 |  |
| YMDB00115 | D-Glyceraldehyde 3-phosphate 142-10-9 | (2-hydroxy-3-oxopropoxy)phosphonic acid | C3H7O6P 170.0578 |  |
| YMDB00153 | Oxoglutaric acid 328-50-7 | 2-oxopentanedioic acid | C5H6O5 146.0981 |  |
| YMDB00175 | Pyruvic acid 127-17-3 | 2-oxopropanoic acid | C3H4O3 88.0621 |  |
| YMDB00223 | D-Erythrose 4-phosphate 585-18-2 | [(2R,3R)-2,3-dihydroxy-4-oxobutoxy]phosphonic acid | C4H9O7P 200.0838 |  |
| YMDB00236 | Succinic acid semialdehyde 692-29-5 | 4-oxobutanoic acid | C4H6O3 102.0886 |  |
| YMDB00343 | Glycolaldehyde 141-46-8 | 2-hydroxyacetaldehyde | C2H4O2 60.052 |  |
| YMDB00355 | O-Phospho-4-hydroxy-L-threonine | (2S,3S)-2-amino-3-hydroxy-4-(phosphonooxy)butanoic acid | C4H10NO7P 215.0985 |  |
| YMDB00363 | Pyridoxal 5'-phosphate 54-47-7 | [(4-formyl-5-hydroxy-6-methylpyridin-3-yl)methoxy]phosphonic acid | C8H10NO6P 247.1419 |  |
| YMDB00384 | 2-Oxo-3-hydroxy-4-phosphobutanoic acid | (3R)-3-hydroxy-2-oxo-4-(phosphonooxy)butanoic acid | C4H7O8P 214.0673 |  |
| YMDB00392 | Pyridoxal 66-72-8 | 3-hydroxy-5-(hydroxymethyl)-2-methylpyridine-4-carbaldehyde | C8H9NO3 167.162 |  |
| YMDB00397 | Pyridoxamine 5'-phosphate 529-96-4 | {[4-(aminomethyl)-5-hydroxy-6-methylpyridin-3-yl]methoxy}phosphonic acid | C8H13N2O5P 248.173 |  |
| YMDB00407 | Pyridoxine 5'-phosphate 447-05-2 | {[5-hydroxy-4-(hydroxymethyl)-6-methylpyridin-3-yl]methoxy}phosphonic acid | C8H12NO6P 249.1577 |  |
| YMDB00494 | 4-Hydroxy-L-threonine 21768-45-6 | (2S,3S)-2-amino-3,4-dihydroxybutanoic acid | C4H9NO4 135.1186 |  |
| YMDB00787 | 4-Pyridoxolactone 4753-19-9 | 7-hydroxy-6-methyl-1H,3H-furo[3,4-c]pyridin-1-one | C8H7NO3 165.1461 |  |
| YMDB00889 | Pyridoxamine 85-87-0 | 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol | C8H12N2O2 168.1931 |  |
| YMDB00948 | D-ribulose 5-phosphate 4151-19-3 | {[(2R,3R)-2,3,5-trihydroxy-4-oxopentyl]oxy}phosphonic acid | C5H11O8P 230.1098 |  |
| YMDB00992 | succinate semialdehyde 692-29-5 | C4H6O3 102.0886 |  | |
| YMDB00993 | D-Alanine 338-69-2 | (2R)-2-aminopropanoic acid | C3H7NO2 89.0932 |  |
| YMDB01053 | pyruvate 127-17-3 | C3H3O3 87.0541 |  | |
| YMDB01458 | 2-methylpyridine 109-06-8 | 2-methylpyridine | C6H7N 93.1265 |  |
Pathway Proteins
| Uniprot ID | Gene Name Locus | Name | Type | Metabolites |
|---|---|---|---|---|
| Q06494 | YPR127W | Putative pyridoxal reductase | Enzyme | |
| P38075 | PDX3 YBR035C | Pyridoxamine 5'-phosphate oxidase | Enzyme | |
| P33330 | SER1 YOR184W | Phosphoserine aminotransferase | Enzyme | |
| P39988 | BUD16 YEL029C | Putative pyridoxal kinase BUD16 | Enzyme | |
| P53727 | BUD17 YNR027W | Putative pyridoxal kinase BUD17 | Enzyme | |
| P16120 | THR4 YCR053W | Threonine synthase | Enzyme |