Ubiquinone and other terpenoid-quinone biosynthesis

Source	ID	Pathway
KEGG	00130

Pathway Metabolites

YMDB ID	Name CAS Number	IUPAC Name	Formula Weight	Structure
YMDB00088	Ubiquinone Q1 727-81-1	2,3-dimethoxy-5-methyl-6-(3-methylbut-2-en-1-yl)cyclohexa-2,5-diene-1,4-dione	C14H18O4 250.2903
YMDB00148	Chorismate 55508-12-8	(3R,4R)-3-[(1-carboxyeth-1-en-1-yl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid	C10H10O6 226.1828
YMDB00151	4-Hydroxyphenylpyruvic acid 156-39-8	3-(4-hydroxyphenyl)-2-oxopropanoic acid	C9H8O4 180.1574
YMDB00174	2-Hexaprenyl-6-methoxy-1,4-benzoquinone	2-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-6-methoxycyclohexa-2,5-diene-1,4-dione	C37H54O3 546.8229
YMDB00266	Geranyl-PP 763-10-0	[({[(2E)-3,7-dimethylocta-2,6-dien-1-yl]oxy}(hydroxy)phosphoryl)oxy]phosphonic acid	C10H20O7P2 314.2091
YMDB00364	L-Tyrosine 60-18-4	(2S)-2-amino-3-(4-hydroxyphenyl)propanoic acid	C9H11NO3 181.1885
YMDB00437	2-hexaprenyl-6-methoxy-3-methyl-1,4-benzoquinone	3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-5-methoxy-2-methylcyclohexa-2,5-diene-1,4-dione	C38H56O3 560.8494
YMDB00440	2-hexaprenyl-6-methoxyphenol	2-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-6-methoxyphenol	C37H56O2 532.8393
YMDB00457	3-(4-hydroxyphenyl)lactic acid 306-23-0	2-hydroxy-3-(4-hydroxyphenyl)propanoic acid	C9H10O4 182.1733
YMDB00459	3-Hexaprenyl-4-hydroxybenzoic acid 65848-03-5	3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-4-hydroxybenzoic acid	C37H54O3 546.8229
YMDB00460	3-Hexaprenyl-4,5-dihydroxybenzoic acid 63975-40-6	3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-4,5-dihydroxybenzoic acid	C37H54O4 562.8223
YMDB00461	3-Hexaprenyl-4-hydroxy-5-methoxybenzoic acid 66551-60-8	3-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-4-hydroxy-5-methoxybenzoic acid	C38H56O4 576.8488
YMDB00495	4-Hydroxybenzoic acid 99-96-7	4-hydroxybenzoic acid	C7H6O3 138.1207
YMDB00496	4-hydroxybenzoyl-CoA 27718-41-8	{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-3-[(2-{[2-(4-hydroxybenzoylsulfanyl)ethyl]carbamoyl}ethyl)carbamoyl]-2,2-dimethylpropoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid	C28H40N7O18P3S 887.64
YMDB00497	4-Coumaroyl-CoA 119785-99-8	{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-3-({2-[(2-{[3-(4-hydroxyphenyl)prop-2-enoyl]sulfanyl}ethyl)carbamoyl]ethyl}carbamoyl)-2,2-dimethylpropoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid	C30H42N7O18P3S 913.677
YMDB00498	trans-4-Coumaric acid 501-98-4	(2E)-3-(4-hydroxyphenyl)prop-2-enoic acid	C9H8O3 164.158
YMDB00614	nonaprenyl diphosphate	{[hydroxy({[(2Z,6Z,10Z,14Z,18Z,22Z,26E,30E)-3,7,11,15,19,23,27,31,35-nonamethylhexatriaconta-2,6,10,14,18,22,26,30,34-nonaen-1-yl]oxy})phosphoryl]oxy}phosphonic acid	C45H76O7P2 791.0283
YMDB00615	nonaprenyl 4-hydroxybenzoate	(2E,6E,10E,14E,18E,22E,26E,30E)-3,7,11,15,19,23,27,31,35-nonamethylhexatriaconta-2,6,10,14,18,22,26,30,34-nonaen-1-yl 4-hydroxybenzoate	C52H78O3 751.1739
YMDB00633	hexaprenyl diphosphate	[({[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]oxy}(hydroxy)phosphoryl)oxy]phosphonic acid	C30H52O7P2 586.6772
YMDB00635	octaprenyl diphosphate	{[hydroxy({[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl]oxy})phosphoryl]oxy}phosphonic acid	C40H68O7P2 722.9112
YMDB00660	Ubiquinone-6 1065-31-2	2-(3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl)-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione	C39H58O4 590.8754
YMDB00670	geranyl diphosphate 763-10-0	[({[(2E)-3,7-dimethylocta-2,6-dien-1-yl]oxy}(hydroxy)phosphoryl)oxy]phosphonic acid	C10H20O7P2 314.2091
YMDB00701	2-hexaprenyl-5-hydroxy-6-methoxy-3-methyl-1,4-benzoquinone	2-[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]-5-hydroxy-6-methoxy-3-methylcyclohexa-2,5-diene-1,4-dione	C38H56O4 576.8488
YMDB00832	all-trans-nonaprenyl diphosphate	{[hydroxy({[(2Z,6Z,10Z,14Z,18Z,22Z,26E,30E)-3,7,11,15,19,23,27,31,35-nonamethylhexatriaconta-2,6,10,14,18,22,26,30,34-nonaen-1-yl]oxy})phosphoryl]oxy}phosphonic acid	C45H76O7P2 791.0283
YMDB00839	all-trans-Hexaprenyl diphosphate	[({[(2E,6E,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]oxy}(hydroxy)phosphoryl)oxy]phosphonic acid	C30H52O7P2 586.6772
YMDB00958	(4-hydroxyphenyl)pyruvic acid 156-39-8	3-(4-hydroxyphenyl)-2-oxopropanoic acid	C9H8O4 180.1574
YMDB01060	trans-4-Coumarate 501-98-4		C9H7O3 163.1501
YMDB01071	3-(4-hydroxyphenyl)lactate 306-23-0		C9H9O4 181.1654
YMDB01078	4-Hydroxybenzoate 99-96-7		C7H5O3 137.1128
YMDB01084	3-(4-hydroxyphenyl)pyruvate 156-39-8		C9H7O4 179.1495
YMDB01493	Ubiquinone 6 1065-31-2	2-(3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl)-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione	C39H58O4 590.8754

Pathway Proteins