One Carbon Pool by Folate I

Source	ID	Pathway
PathWhiz	PW002468

Pathway Metabolites

YMDB ID	Name CAS Number	IUPAC Name	Formula Weight	Structure
YMDB00001	5'-Phosphoribosyl-N-formylglycinamide 349-34-8	{[(2R,3S,4R,5R)-3,4-dihydroxy-5-(2-formamidoacetamido)oxolan-2-yl]methoxy}phosphonic acid	C8H15N2O9P 314.1865
YMDB00016	Glycine 56-40-6	2-aminoacetic acid	C2H5NO2 75.0666
YMDB00079	Dihydrofolic acid 4033-27-6	(2S)-2-[(4-{[(2-amino-4-oxo-1,4,7,8-tetrahydropteridin-6-yl)methyl]amino}phenyl)formamido]pentanedioic acid	C19H21N7O6 443.4133
YMDB00080	N10-Formyl-THF 2800-34-2	(2S)-2-[(4-{N-[(4-hydroxy-2-imino-1,2,5,6,7,8-hexahydropteridin-6-yl)methyl]formamido}phenyl)formamido]pentanedioic acid	C20H23N7O7 473.4393
YMDB00091	Ammonia 7664-41-7	ammonia	H3N 17.0305
YMDB00112	L-Serine 56-45-1	(2S)-2-amino-3-hydroxypropanoic acid	C3H7NO3 105.0926
YMDB00139	Tetrahydrofolic acid 135-16-0	2-{[4-({[(6S)-4-hydroxy-2-imino-1,2,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]formamido}pentanedioic acid	C19H23N7O6 445.4292
YMDB00162	5-Thymidylic acid 365-07-1	{[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)oxolan-2-yl]methoxy}phosphonic acid	C10H15N2O8P 322.2085
YMDB00176	5,10-Methenyltetrahydrofolic acid 7444-29-3		C20H21N7O6 455.424
YMDB00221	dUMP 964-26-1	{[(2R,3S,5R)-5-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)-3-hydroxyoxolan-2-yl]methoxy}phosphonic acid	C9H13N2O8P 308.1819
YMDB00238	5-Methyltetrahydrofolic acid 134-35-0	(2R)-2-[(4-{[(2-amino-5-methyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl)methyl]amino}phenyl)formamido]pentanedioic acid	C20H25N7O6 459.4558
YMDB00260	5,10-Methylene-THF 31690-11-6	2-({4-[(6aR)-1-hydroxy-3-imino-3H,4H,5H,6H,6aH,7H,8H,9H-imidazo[1,5-f]pteridin-8-yl]phenyl}formamido)pentanedioic acid	C20H23N7O6 457.4399
YMDB00298	N5-Formyl-THF 58-05-9	2-[(4-{[(2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl)methyl]amino}phenyl)formamido]pentanedioic acid	C20H23N7O7 473.4393
YMDB00318	L-Methionine 63-68-3	(2S)-2-amino-4-(methylsulfanyl)butanoic acid	C5H11NO2S 149.211
YMDB00371	Homocysteine 454-29-5	2-amino-4-sulfanylbutanoic acid	C4H9NO2S 135.185
YMDB00374	Glycineamideribotide 10074-18-7	{[(2R,3S,4R,5R)-5-(2-aminoacetamido)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid	C7H15N2O8P 286.1764
YMDB00385	Formic acid 64-18-6	formic acid	CH2O2 46.0254
YMDB00426	NADPH 53-57-6	{[(2R,3R,4R,5R)-2-(6-amino-9H-purin-9-yl)-5-[({[({[(2R,3S,4R,5R)-5-(3-carbamoyl-1,4-dihydropyridin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-4-hydroxyoxolan-3-yl]oxy}phosphonic acid	C21H30N7O17P3 745.4209
YMDB00427	NADP 53-59-8	1-[(2R,3R,4S,5R)-5-[({[({[(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)methyl]-3,4-dihydroxyoxolan-2-yl]-3-carbamoyl-1lambda5-pyridin-1-ylium	C21H29N7O17P3 744.4129
YMDB00483	5,6,7,8-Tetrahydrofolic acid 135-16-0	(2S)-2-[(4-{[(2-amino-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl)methyl]amino}phenyl)formamido]pentanedioic acid	C19H23N7O6 445.4292
YMDB00517	10-Formyltetrahydrofolic acid 2800-34-2	(2S)-2-{[4-(N-{[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}formamido)phenyl]formamido}pentanedioic acid	C20H23N7O7 473.4393
YMDB00520	L-Homocysteine 6027-13-0	(2S)-2-amino-4-sulfanylbutanoic acid	C4H9NO2S 135.185
YMDB00562	5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide 3031-94-5	{[(2R,3S,4R,5R)-5-(5-amino-4-carbamoyl-1H-imidazol-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid	C9H15N4O8P 338.2112
YMDB00759	N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide 349-34-8	{[(2R,3S,4R)-3,4-dihydroxy-5-(2-formamidoacetamido)oxolan-2-yl]methoxy}phosphonic acid	C8H15N2O9P 314.1865
YMDB00760	N(1)-(5-phospho-D-ribosyl)glycinamide 10074-18-7	{[(2R,3S,4R)-5-(2-aminoacetamido)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid	C7H15N2O8P 286.1764
YMDB00848	(6R)-5,10-methylenetetrahydrofolic acid 3432-99-3	(2S)-2-({4-[(6aR)-3-amino-1-oxo-1H,2H,5H,6H,6aH,7H,8H,9H-imidazolidino[1,5-f]pteridin-8-yl]phenyl}formamido)pentanedioic acid	C20H23N7O6 457.4399
YMDB00862	hydron 12408-02-5	hydron	H 1.00794
YMDB00890	water 7732-18-5	water	H2O 18.0153
YMDB01481	Acadesine 3031-94-5	{[(2R,3S,4R,5R)-5-(5-amino-4-carbamoyl-1H-imidazol-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid	C9H15N4O8P 338.2112
YMDB16112	Folic acid	(2S)-2-[(4-{[(2-amino-4-oxo-1,4-dihydropteridin-6-yl)methyl]amino}phenyl)formamido]pentanedioic acid	C19H19N7O6 441.3975
YMDB16150	5'-phosphoribosyl-a-N-formylglycineamidine	({5-[(Z)-(1-amino-2-formamidoethylidene)amino]-3,4-dihydroxyoxolan-2-yl}methoxy)phosphonic acid	C8H16N3O8P 313.2017
YMDB16256	FAICAR	{[5-(3-carbamoyl-4-formamido-1H-pyrazol-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}phosphonic acid	C10H15N4O9P 366.223
YMDB16272	4-Amino-4-deoxy-L-arabinose	[({[(2R,3R,4S,5S)-5-amino-3,4-dihydroxyoxan-2-yl]oxy}(hydroxy)phosphoryl)oxy]({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy})phosphinic acid	C14H23N3O15P2 535.291
YMDB16275	UDP-4-Deoxy-4-formamido-beta-L-arabinose	N-[(3S,4S,5R,6R)-6-({[({[(2R,3S,4R,5R)-3,4-dihydroxy-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-4,5-dihydroxyoxan-3-yl]carboximidic acid	C15H23N3O16P2 563.3011

Pathway Proteins