Biotin Biosynthesis

Source	ID	Pathway
PathWhiz	PW002380

Pathway Metabolites

YMDB ID	Name CAS Number	IUPAC Name	Formula Weight	Structure
YMDB00075	Dethiobiotin 533-48-2	6-[(4R,5S)-5-methyl-2-oxoimidazolidin-4-yl]hexanoic acid	C10H18N2O3 214.2615
YMDB00109	Adenosine triphosphate 56-65-5	({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)phosphonic acid	C10H16N5O13P3 507.181
YMDB00150	5'-Deoxyadenosine 4754-39-6	(2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-methyloxolane-3,4-diol	C10H13N5O3 251.2419
YMDB00250	S-adenosyl-4-methylthio-2-oxobutanoic acid	{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl}(3-carboxy-3-oxopropyl)methylsulfanium	C15H20N5O6S 398.414
YMDB00282	Biotin 58-85-5	5-[(3aS,4S,6aR)-2-oxo-hexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid	C10H16N2O3S 244.311
YMDB00297	S-Adenosylmethionine 29908-03-0	[(3S)-3-amino-3-carboxypropyl]({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl})methylsulfanium	C15H23N6O5S 399.445
YMDB00318	L-Methionine 63-68-3	(2S)-2-amino-4-(methylsulfanyl)butanoic acid	C5H11NO2S 149.211
YMDB00438	S-Adenosyl-L-methionine 29908-03-0	[(3S)-3-amino-3-carboxypropyl]({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl})methylsulfanium	C15H23N6O5S 399.445
YMDB00862	hydron 12408-02-5	hydron	H 1.00794
YMDB00905	8-Amino-7-oxononanoic acid 4707-58-8		C9H17NO3 187.2362
YMDB00907	phosphate 14265-44-2	phosphoric acid	O4P 94.9714
YMDB00912	Carbon dioxide 124-38-9	methanedione	CO2 44.0095
YMDB00914	ADP 58-64-0	[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]phosphonic acid	C10H15N5O10P2 427.2011
YMDB16140	Diaminopimelic acid	(2S,6S)-2,6-diaminoheptanedioic acid	C7H14N2O4 190.1971

Pathway Proteins